STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_1464PFAM: Stage V sporulation AD family protein; KEGG: bca:BCE_5250 stage V sporulation protein AD. (335 aa)    
Predicted Functional Partners:
Dred_1465
PFAM: SpoVA protein; KEGG: gka:GK0853 stage V sporulation protein AC.
 
  
 0.982
Dred_1463
PFAM: SpoVA protein; KEGG: bha:BH1570 sporulation protein.
 
  
 0.965
Dred_1106
PFAM: SpoVA protein; KEGG: ctc:CTC02245 stage V sporulation protein AC.
 
  
 0.925
Dred_1466
PFAM: protein of unknown function DUF421; protein of unknown function DUF1657; KEGG: gka:GK0857 hypothetical protein.
 
  
 0.924
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.917
Dred_1467
KEGG: gka:GK0851 hypothetical protein.
 
     0.881
Dred_1108
PFAM: SpoVA protein; KEGG: swo:Swol_0628 SpoVA protein.
 
  
 0.862
Dred_1110
PFAM: Bacillus/Clostridium GerA spore germination protein; KEGG: dsy:DSY2298 hypothetical protein.
 
  
 0.845
Dred_0054
PFAM: Bacillus/Clostridium GerA spore germination protein; KEGG: mta:Moth_2042 GerA spore germination protein.
  
  
 0.790
Dred_2663
PFAM: Bacillus/Clostridium GerA spore germination protein; KEGG: bld:BLi00453 GerKA.
  
  
 0.790
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.