STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_1542N-methylhydantoinase A/acetone carboxylase beta subunit-like protein; KEGG: sgl:SGP2_0010 putative hydantoinase. (436 aa)    
Predicted Functional Partners:
Dred_1543
PFAM: protein of unknown function DUF917; KEGG: chy:CHY_1332 hypothetical protein.
 
    0.948
Dred_1545
PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: dsy:DSY1111 hypothetical protein.
 
     0.860
Dred_1546
PFAM: protein of unknown function DUF917; KEGG: bha:BH1883 hypothetical protein.
 
    0.860
Dred_1547
PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: chy:CHY_1337 hydantoinase/oxoprolinase family protein.
 
     0.853
Dred_1560
5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase B/oxoprolinase; KEGG: gka:GK2893 N-methylhydantoinase B (ATP-hydrolyzing).
  
 
 0.812
Dred_0395
PFAM: protein of unknown function DUF917; KEGG: pat:Patl_3468 protein of unknown function DUF917.
 
    0.781
Dred_1544
Sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: chy:CHY_1333 putative sigma-54-dependent transcriptional regulator.
       0.773
Dred_1886
PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: mma:MM0068 N-methylhydantoinase (ATP-hydrolyzing).
  
     0.595
Dred_1549
PFAM: protein of unknown function DUF1177; KEGG: pho:PH1050 hypothetical protein.
 
     0.492
Dred_3104
KEGG: mta:Moth_2315 hypothetical protein.
 
     0.430
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.