STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_1567PFAM: protein of unknown function DUF541; KEGG: syn:slr1258 hypothetical protein. (246 aa)    
Predicted Functional Partners:
Dred_1568
PFAM: NUDIX hydrolase; KEGG: fnu:FN0931 phosphohydrolase (MutT/NUDIX family protein).
       0.762
Dred_2407
PFAM: flagellar motor switch protein FliG; KEGG: chy:CHY_0994 flagellar motor protein.
   
   0.599
Dred_2399
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
   
   0.583
Dred_1566
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: bcl:ABC2415 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
       0.515
Dred_1563
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll9135 Dipeptide transport system permease protein.
       0.499
Dred_1564
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll9134 Dipeptide transport system permease protein.
       0.499
Dred_1565
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: sth:STH2824 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
       0.499
Dred_1087
CheC, inhibitor of MCP methylation; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: chy:CHY_1020 flagellar motor switch protein.
 
 
   0.497
Dred_0354
PFAM: OmpA/MotB domain protein; KEGG: dsy:DSY0295 hypothetical protein.
    
   0.436
Dred_2442
PFAM: OmpA/MotB domain protein; KEGG: chy:CHY_0964 flagellar motor protein MotB.
    
   0.436
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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