STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_1584PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: tte:TTE0698 hypothetical protein. (383 aa)    
Predicted Functional Partners:
Dred_1585
Putative PAS/PAC sensor protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Fe-S cluster domain protein; SMART: PAS domain containing protein; KEGG: tte:TTE0697 ferredoxin 2.
 
     0.956
Dred_2145
KEGG: ava:Ava_4779 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
  
 0.938
Dred_3258
KEGG: wsu:WS0901 GGDEF family protein.
  
  
 0.877
spoIIAB
Putative anti-sigma regulatory factor, serine/threonine protein kinase; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
  
 
 0.845
Dred_2305
Ferredoxin 2; KEGG: tte:TTE0697 ferredoxin 2.
 
    0.826
Dred_0836
PFAM: EAL domain protein; KEGG: tcx:Tcr_1820 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains).
  
  
 0.800
Dred_2150
Iron-only hydrogenase maturation protein HydG; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; KEGG: mta:Moth_1734 biotin and thiamin synthesis associated.
  
    0.764
Dred_2407
PFAM: flagellar motor switch protein FliG; KEGG: chy:CHY_0994 flagellar motor protein.
  
    0.763
Dred_2381
PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: chy:CHY_1019 flagellar motor switch protein FliM.
  
    0.755
Dred_2411
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
   
    0.748
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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