STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_1603PFAM: Cupin 2, conserved barrel domain protein; KEGG: ctc:CTC00439 hypothetical protein. (87 aa)    
Predicted Functional Partners:
Dred_1604
KEGG: ljo:LJ0139 hypothetical protein.
       0.550
Dred_2967
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SirA family protein; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: bfr:BF0575 pyridine nucleotide-disulphide oxidoreductase; Belongs to the sulfur carrier protein TusA family.
  
    0.466
Dred_2149
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; TrkA-C domain protein; KEGG: mta:Moth_1689 transcriptional regulator, GntR family.
  
  
 0.460
Dred_1506
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bsu:BG13508 similar to transcriptional regulator (AraC/XylS family).
 
 
 0.424
Dred_1602
KEGG: chy:CHY_1595 hypothetical protein.
       0.420
Dred_2751
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: dsy:DSY4747 hypothetical protein.
  
    0.405
Dred_2758
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: dsy:DSY0248 hypothetical protein.
  
    0.405
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
   
    0.400
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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