STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_1761PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: dsy:DSY1819 hypothetical protein. (515 aa)    
Predicted Functional Partners:
Dred_0773
PFAM: protein of unknown function DUF965; KEGG: mta:Moth_1643 protein of unknown function DUF965; Belongs to the UPF0297 family.
  
     0.722
Dred_2460
PFAM: protein of unknown function DUF633; KEGG: chy:CHY_0459 hypothetical protein.
  
     0.714
Dred_0198
RNA polymerase, sigma 30 subunit, SigH; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: mta:Moth_2479 sigma-24 (FecI-like); Belongs to the sigma-70 factor family.
  
    0.693
Dred_0209
KEGG: chy:CHY_2316 ribosomal protein L7ae family protein.
  
    0.665
Dred_1762
TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; elongation factor G, domain IV; KEGG: swo:Swol_1152 translation elongation factor G.
       0.583
Dred_2057
Putative helix-turn-helix protein, YlxM/p13 family protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
     0.581
Dred_0118
PFAM: YabP family protein; KEGG: sth:STH3228 hypothetical protein.
  
  
 0.564
spoVG
SpoVG family protein; Could be involved in septation.
 
   
 0.558
Dred_0113
TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: chy:CHY_0202 stage V sporulation protein T.
 
   
 0.521
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
  
     0.513
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.