node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Dred_0498 | Dred_0864 | Dred_0498 | Dred_0864 | KEGG: bcl:ABC1366 hypothetical protein. | PFAM: DNA methylase N-4/N-6 domain protein; KEGG: sth:STH334 DNA modification methylase M.SthI; Belongs to the N(4)/N(6)-methyltransferase family. | 0.462 |
Dred_0498 | Dred_1084 | Dred_0498 | Dred_1084 | KEGG: bcl:ABC1366 hypothetical protein. | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.767 |
Dred_0498 | Dred_2145 | Dred_0498 | Dred_2145 | KEGG: bcl:ABC1366 hypothetical protein. | KEGG: ava:Ava_4779 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein. | 0.727 |
Dred_0498 | cinA | Dred_0498 | Dred_1922 | KEGG: bcl:ABC1366 hypothetical protein. | TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: dsy:DSY1955 hypothetical protein; Belongs to the CinA family. | 0.715 |
Dred_0498 | dinG | Dred_0498 | Dred_1743 | KEGG: bcl:ABC1366 hypothetical protein. | DNA polymerase III, epsilon subunit; 3'-5' exonuclease. | 0.748 |
Dred_0498 | lexA | Dred_0498 | Dred_1873 | KEGG: bcl:ABC1366 hypothetical protein. | SOS-response transcriptional repressor, LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.861 |
Dred_0498 | polA | Dred_0498 | Dred_1599 | KEGG: bcl:ABC1366 hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.982 |
Dred_0864 | Dred_0498 | Dred_0864 | Dred_0498 | PFAM: DNA methylase N-4/N-6 domain protein; KEGG: sth:STH334 DNA modification methylase M.SthI; Belongs to the N(4)/N(6)-methyltransferase family. | KEGG: bcl:ABC1366 hypothetical protein. | 0.462 |
Dred_0864 | Dred_2145 | Dred_0864 | Dred_2145 | PFAM: DNA methylase N-4/N-6 domain protein; KEGG: sth:STH334 DNA modification methylase M.SthI; Belongs to the N(4)/N(6)-methyltransferase family. | KEGG: ava:Ava_4779 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein. | 0.494 |
Dred_0864 | lexA | Dred_0864 | Dred_1873 | PFAM: DNA methylase N-4/N-6 domain protein; KEGG: sth:STH334 DNA modification methylase M.SthI; Belongs to the N(4)/N(6)-methyltransferase family. | SOS-response transcriptional repressor, LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.618 |
Dred_1084 | Dred_0498 | Dred_1084 | Dred_0498 | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. | KEGG: bcl:ABC1366 hypothetical protein. | 0.767 |
Dred_1084 | cinA | Dred_1084 | Dred_1922 | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. | TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: dsy:DSY1955 hypothetical protein; Belongs to the CinA family. | 0.664 |
Dred_1084 | dinG | Dred_1084 | Dred_1743 | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. | DNA polymerase III, epsilon subunit; 3'-5' exonuclease. | 0.587 |
Dred_1084 | lexA | Dred_1084 | Dred_1873 | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. | SOS-response transcriptional repressor, LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.606 |
Dred_1084 | polA | Dred_1084 | Dred_1599 | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.561 |
Dred_1084 | recA | Dred_1084 | Dred_1920 | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.876 |
Dred_1084 | recR | Dred_1084 | Dred_0044 | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. | DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.459 |
Dred_1871 | lexA | Dred_1871 | Dred_1873 | TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: chy:CHY_1374 fumarate hydratase, beta subunit. | SOS-response transcriptional repressor, LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.440 |
Dred_2145 | Dred_0498 | Dred_2145 | Dred_0498 | KEGG: ava:Ava_4779 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein. | KEGG: bcl:ABC1366 hypothetical protein. | 0.727 |
Dred_2145 | Dred_0864 | Dred_2145 | Dred_0864 | KEGG: ava:Ava_4779 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein. | PFAM: DNA methylase N-4/N-6 domain protein; KEGG: sth:STH334 DNA modification methylase M.SthI; Belongs to the N(4)/N(6)-methyltransferase family. | 0.494 |