node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Dred_0775 | miaA | Dred_0775 | Dred_1882 | Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.765 |
Dred_0783 | Dred_1883 | Dred_0783 | Dred_1883 | PFAM: prephenate dehydratase; Chorismate mutase; KEGG: det:DET0461 chorismate mutase / prephenate dehydratase. | KEGG: swo:Swol_0978 hypothetical protein. | 0.514 |
Dred_0783 | dapF | Dred_0783 | Dred_1694 | PFAM: prephenate dehydratase; Chorismate mutase; KEGG: det:DET0461 chorismate mutase / prephenate dehydratase. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.578 |
Dred_0783 | miaA | Dred_0783 | Dred_1882 | PFAM: prephenate dehydratase; Chorismate mutase; KEGG: det:DET0461 chorismate mutase / prephenate dehydratase. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.692 |
Dred_0783 | pheT | Dred_0783 | Dred_1620 | PFAM: prephenate dehydratase; Chorismate mutase; KEGG: det:DET0461 chorismate mutase / prephenate dehydratase. | TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: mta:Moth_1750 phenylalanyl-tRNA synthetase, beta subunit. | 0.541 |
Dred_1883 | Dred_0783 | Dred_1883 | Dred_0783 | KEGG: swo:Swol_0978 hypothetical protein. | PFAM: prephenate dehydratase; Chorismate mutase; KEGG: det:DET0461 chorismate mutase / prephenate dehydratase. | 0.514 |
Dred_1883 | Dred_1885 | Dred_1883 | Dred_1885 | KEGG: swo:Swol_0978 hypothetical protein. | PFAM: histone deacetylase superfamily; KEGG: mac:MA2888 histone deacetylase. | 0.849 |
Dred_1883 | hfq | Dred_1883 | Dred_1881 | KEGG: swo:Swol_0978 hypothetical protein. | RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.687 |
Dred_1883 | miaA | Dred_1883 | Dred_1882 | KEGG: swo:Swol_0978 hypothetical protein. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.881 |
Dred_1883 | miaB | Dred_1883 | Dred_1889 | KEGG: swo:Swol_0978 hypothetical protein. | tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | 0.450 |
Dred_1883 | mutL | Dred_1883 | Dred_1884 | KEGG: swo:Swol_0978 hypothetical protein. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.853 |
Dred_1885 | Dred_1883 | Dred_1885 | Dred_1883 | PFAM: histone deacetylase superfamily; KEGG: mac:MA2888 histone deacetylase. | KEGG: swo:Swol_0978 hypothetical protein. | 0.849 |
Dred_1885 | hfq | Dred_1885 | Dred_1881 | PFAM: histone deacetylase superfamily; KEGG: mac:MA2888 histone deacetylase. | RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.628 |
Dred_1885 | miaA | Dred_1885 | Dred_1882 | PFAM: histone deacetylase superfamily; KEGG: mac:MA2888 histone deacetylase. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.715 |
Dred_1885 | miaB | Dred_1885 | Dred_1889 | PFAM: histone deacetylase superfamily; KEGG: mac:MA2888 histone deacetylase. | tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | 0.423 |
Dred_1885 | mutL | Dred_1885 | Dred_1884 | PFAM: histone deacetylase superfamily; KEGG: mac:MA2888 histone deacetylase. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.867 |
dapF | Dred_0783 | Dred_1694 | Dred_0783 | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | PFAM: prephenate dehydratase; Chorismate mutase; KEGG: det:DET0461 chorismate mutase / prephenate dehydratase. | 0.578 |
dapF | miaA | Dred_1694 | Dred_1882 | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.735 |
hflX | hfq | Dred_1259 | Dred_1881 | GTP-binding protein, HSR1-related protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.547 |
hflX | miaA | Dred_1259 | Dred_1882 | GTP-binding protein, HSR1-related protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.804 |