STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_1973Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. (263 aa)    
Predicted Functional Partners:
Dred_1972
PFAM: phosphatidate cytidylyltransferase; KEGG: mta:Moth_1039 phosphatidate cytidylyltransferase; Belongs to the CDS family.
  
 0.993
Dred_1076
Farnesyl-diphosphate synthase; PFAM: Polyprenyl synthetase; KEGG: gsu:GSU1765 geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
 
 
 0.966
Dred_2166
Trans-hexaprenyltranstransferase; PFAM: Polyprenyl synthetase; KEGG: mta:Moth_1252 trans-hexaprenyltranstransferase; Belongs to the FPP/GGPP synthase family.
 
 
 0.953
dxr
1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.
  
  
 0.950
Dred_1969
Site-2 protease, Metallo peptidase, MEROPS family M50B; TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: chy:CHY_1777 putative membrane-associated zinc metalloprotease.
  
  
 0.933
Dred_2184
Geranylgeranyl pyrophosphate synthase-like protein; KEGG: sth:STH190 polyprenyl synthetase.
 
 
 0.928
proS
prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...]
 
    0.921
Dred_1450
Di-trans,poly-cis-decaprenylcistransferase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; KEGG: chy:CHY_0237 putative undecaprenyl diphosphate synthase.
  
  
 
0.919
uppP
Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
     
 0.915
Dred_2199
KEGG: dsy:DSY2235 hypothetical protein; Belongs to the FPP/GGPP synthase family.
  
 
 0.911
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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