STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_1999PFAM: CBS domain containing protein. (152 aa)    
Predicted Functional Partners:
Dred_1998
Hypothetical protein.
       0.741
Dred_1997
PFAM: Helix-turn-helix, type 11 domain protein.
       0.689
Dred_1996
PFAM: CBS domain containing protein.
  
    0.657
Dred_2869
PFAM: protein of unknown function DUF169; KEGG: dvl:Dvul_2784 protein of unknown function DUF169.
  
     0.656
Dred_1991
TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: dde:Dde_0326 transmembrane transport proteins-like.
 
     0.655
Dred_1988
TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: dde:Dde_0326 transmembrane transport proteins-like.
 
     0.644
Dred_1265
PFAM: protein of unknown function DUF169; KEGG: dvl:Dvul_2784 protein of unknown function DUF169.
  
     0.636
Dred_1849
Tungstate/molybdate binding protein; KEGG: sat:SYN_00077 ABC-type molybdate transport system, periplasmic component.
  
   
 0.630
Dred_1264
PFAM: protein of unknown function DUF81; KEGG: dsy:DSY1995 hypothetical protein.
 
     0.602
Dred_1995
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: dsy:DSY1993 hypothetical protein.
 
     0.535
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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