STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_2100Penicillin-binding protein, 1A family; KEGG: swo:Swol_0921 penicillin-binding protein; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase. (661 aa)    
Predicted Functional Partners:
Dred_1646
TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: chy:CHY_1563 penicillin-binding protein, 1A family.
 
 
0.942
Dred_1803
TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: tel:tll0049 penicillin-binding protein.
  
  
 
0.918
Dred_0716
PFAM: DivIVA family protein; KEGG: tte:TTE1596 Cell division initiation protein.
   
 
 0.869
Dred_0674
Cell division-specific peptidoglycan biosynthesis regulator FtsW; TIGRFAM: cell division protein FtsW; stage V sporulation protein E; PFAM: cell cycle protein; KEGG: swo:Swol_0825 cell cycle protein; Belongs to the SEDS family.
  
 
 
 0.753
Dred_0669
Stage V sporulation protein D; KEGG: chy:CHY_2075 penicillin-binding protein 2B; TIGRFAM: stage V sporulation protein D; PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PASTA domain containing protein.
 
 
0.719
Dred_0313
KEGG: chy:CHY_0358 peptidoglycan biosynthesis protein, FtsW/RodA/SpoVE family; Belongs to the SEDS family.
  
 
 
 0.712
Dred_0798
PFAM: peptidase M23B; Lytic transglycosylase, catalytic; KEGG: mta:Moth_0315 peptidase M23B.
  
   
 0.697
rodA
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
  
 
 
 0.692
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
   
 0.682
Dred_3173
Peptidase M23B; PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: swo:Swol_2406 peptidase M23B.
  
   
 0.661
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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