STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_2115PFAM: response regulator receiver; KEGG: rba:RB5175 probable pilus assembly protein CpaE. (412 aa)    
Predicted Functional Partners:
Dred_2114
PFAM: SAF domain; KEGG: vpa:VP2420 putative pilus assembly protein.
 
  
 0.980
Dred_2117
PFAM: type II secretion system protein; KEGG: rba:RB5941 secretion system protein TadB.
 
  
 0.977
Dred_2116
PFAM: type II secretion system protein E; KEGG: art:Arth_2925 type II secretion system protein E.
  
 0.976
Dred_2118
PFAM: type II secretion system protein; KEGG: nca:Noca_3118 type II secretion system protein.
 
  
 0.974
Dred_2112
PFAM: TadE family protein; KEGG: sat:SYN_01494 flp pilus assembly protein family.
 
  
 0.969
Dred_2113
KEGG: vvy:VV2658 hypothetical protein.
 
  
 0.969
Dred_2111
PFAM: peptidase A24A, prepilin type IV; KEGG: sat:SYN_01490 flp pilus assembly protein, protease.
 
  
 0.956
Dred_2110
PFAM: Flp/Fap pilin component; KEGG: dde:Dde_2357 pilin, putative.
 
  
 0.954
Dred_2119
PFAM: protein of unknown function DUF192; KEGG: mxa:MXAN_2045 hypothetical protein.
 
     0.933
Dred_2440
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; P2 response regulator binding domain protein; KEGG: chy:CHY_0967 chemotaxis protein CheA.
  
 
 0.870
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.