STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_2133PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; KEGG: swo:Swol_0734 ATP binding protein. (252 aa)    
Predicted Functional Partners:
Dred_2132
PFAM: Integrase, catalytic region; KEGG: shw:Sputw3181_1114 integrase, catalytic region.
  
 0.956
Dred_3122
KEGG: dsy:DSY3297 hypothetical protein.
  
 0.843
Dred_0303
PFAM: Integrase, catalytic region; KEGG: shw:Sputw3181_1114 integrase, catalytic region.
  
 0.814
Dred_3016
PFAM: Integrase, catalytic region; KEGG: shw:Sputw3181_1114 integrase, catalytic region.
  
 0.814
Dred_0300
Transposase and inactivated derivatives-like protein; KEGG: ajs:Ajs_3099 integrase, catalytic region.
  
  
 0.769
Dred_3301
Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
 
 0.707
Dred_0117
TIGRFAM: SpoIID/LytB domain; PFAM: Stage II sporulation D domain protein; KEGG: chy:CHY_0206 SpoIID/LytB domain protein.
   
    0.575
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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