STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_2149Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; TrkA-C domain protein; KEGG: mta:Moth_1689 transcriptional regulator, GntR family. (215 aa)    
Predicted Functional Partners:
Dred_1707
Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
   0.745
Dred_0332
Glucose PTS system EIICBA or EIICB component; TIGRFAM: PTS system, glucose subfamily, IIA subunit; PTS system, glucose-like IIB subunint; PFAM: sugar-specific permease, EIIA 1 domain; phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: cno:NT01CX_0332 PTS enzyme II, ABC component; TC 4.A.1.1.6; TC 4.A.1.1.6; TC 4.A.1.1.6.
  
  
 0.721
Dred_0888
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: mta:Moth_0285 transcriptional regulator, XRE family.
  
  
 0.689
Dred_1558
PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: gka:GK2895 hypothetical protein.
  
  
 0.689
Dred_1616
TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: chy:CHY_1575 potassium uptake protein KtrB.
  
 
 0.663
Dred_2912
TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: ctc:CTC00235 potassium uptake protein trkH.
  
 
 0.663
Dred_2145
KEGG: ava:Ava_4779 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
  
 0.625
Dred_2162
uroporphyrinogen-III C-methyltransferase / uroporphyrinogen-III synthase; TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dsy:DSY2224 hypothetical protein.
  
    0.600
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
     
 0.599
Dred_2967
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SirA family protein; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: bfr:BF0575 pyridine nucleotide-disulphide oxidoreductase; Belongs to the sulfur carrier protein TusA family.
 
  
 0.571
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.