STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_2153KEGG: tte:TTE1595 hypothetical protein. (82 aa)    
Predicted Functional Partners:
Dred_2923
Hypothetical protein.
  
 
 0.982
Dred_2152
Iron-only hydrogenase maturation protein HydF; TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Miro domain protein; KEGG: mta:Moth_1277 small GTP-binding protein domain.
 
   
 0.951
Dred_2151
Iron-only hydrogenase maturation protein HydE; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mta:Moth_1735 radical SAM.
 
  
 0.933
Dred_2150
Iron-only hydrogenase maturation protein HydG; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; KEGG: mta:Moth_1734 biotin and thiamin synthesis associated.
 
   
 0.926
Dred_1530
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpf:CPF_0441 putative iron ABC transporter, permease protein.
   
  
 0.630
Dred_1585
Putative PAS/PAC sensor protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Fe-S cluster domain protein; SMART: PAS domain containing protein; KEGG: tte:TTE0697 ferredoxin 2.
 
     0.605
Dred_1654
NAD(P)-dependent iron-only hydrogenase catalytic subunit; TIGRFAM: hydrogenases, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; iron hydrogenase, small subunit; hydrogenase large subunit domain protein; KEGG: tte:TTE0894 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G).
 
     0.546
Dred_1584
PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: tte:TTE0698 hypothetical protein.
  
     0.536
Dred_2228
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mma:MM2547 putative ferredoxin.
  
  
 0.516
Dred_1651
NAD(P)-dependent iron-only hydrogenase catalytic subunit; TIGRFAM: hydrogenases, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; iron hydrogenase, small subunit; hydrogenase large subunit domain protein; KEGG: mta:Moth_1717 iron hydrogenase, small subunit.
 
     0.509
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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