STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
selAL-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. (475 aa)    
Predicted Functional Partners:
selD
Selenophosphate synthase; Synthesizes selenophosphate from selenide and ATP.
 
  
 0.991
Dred_2185
TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; small GTP-binding protein domain; KEGG: mta:Moth_2503 selenocysteine-specific translation elongation factor.
  
 0.988
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
     
 0.928
Dred_1242
Transcriptional regulator; PFAM: SirA family protein; KEGG: mta:Moth_0124 SirA-like; Belongs to the sulfur carrier protein TusA family.
 
  
 0.795
Dred_1114
Formate dehydrogenase alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sth:STH2601 formate dehydrogenase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.762
Dred_1113
Formate dehydrogenase; PFAM: molybdopterin oxidoreductase Fe4S4 region; KEGG: sth:STH2602 putative formate dehydrogenase subunit.
 
  
 0.691
Dred_1117
Uncharacterized protein involved in formate dehydrogenase formation-like protein; Necessary for formate dehydrogenase activity. Belongs to the FdhE family.
 
   
 0.566
Dred_2187
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: chy:CHY_0434 transcriptional regulator, GntR family.
       0.554
Dred_1278
PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component; KEGG: mta:Moth_1446 2-hydroxyglutaryl-CoA dehydratase, D-component.
  
     0.533
Dred_2149
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; TrkA-C domain protein; KEGG: mta:Moth_1689 transcriptional regulator, GntR family.
  
    0.520
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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