STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_2222Cobyrinic acid a,c-diamide synthase; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Cobyrinic acid a,c-diamide synthase; KEGG: tte:TTE1892 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain. (276 aa)    
Predicted Functional Partners:
Dred_2223
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: mmp:MMP0451 hypothetical protein.
 
  
 0.951
Dred_2220
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: cno:NT01CX_1490 hypothetical protein.
  
 0.904
Dred_1654
NAD(P)-dependent iron-only hydrogenase catalytic subunit; TIGRFAM: hydrogenases, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; iron hydrogenase, small subunit; hydrogenase large subunit domain protein; KEGG: tte:TTE0894 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G).
   
 
 0.892
Dred_0659
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: mma:MM0988 hypothetical protein.
 
  
 0.793
Dred_2221
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tte:TTE1891 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain.
 
    
0.731
Dred_1434
PFAM: beta-lactamase domain protein; KEGG: mta:Moth_1430 beta-lactamase-like.
 
     0.695
Dred_0656
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: dsy:DSY1612 hypothetical protein.
 
  
 0.639
Dred_1341
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: dsy:DSY1612 hypothetical protein.
 
  
 0.596
Dred_1340
PFAM: protein of unknown function DUF134; KEGG: mta:Moth_1655 protein of unknown function DUF134; Belongs to the UPF0251 family.
 
     0.544
Dred_2217
PFAM: protein of unknown function DUF134; KEGG: dsy:DSY3441 hypothetical protein; Belongs to the UPF0251 family.
 
     0.528
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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