STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_2286RNA polymerase, sigma-24 subunit, RpoE; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sth:STH845 RNA polymerase ECF-type sigma factor. (200 aa)    
Predicted Functional Partners:
Dred_2285
Putative transmembrane anti-sigma factor; KEGG: sth:STH846 hypothetical protein.
 
   0.821
Dred_0040
KEGG: mta:Moth_2363 putative transmembrane transcriptional regulator (anti-sigma factor).
 
 
 0.807
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.696
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.675
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.601
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 
 0.599
Dred_1268
PFAM: MCP methyltransferase, CheR-type; KEGG: ana:all1848 similar to methyltransferase.
    
   0.505
Dred_2384
Protein-glutamate O-methyltransferase; PFAM: MCP methyltransferase, CheR-type; KEGG: mta:Moth_0801 MCP methyltransferase, CheR-type.
    
   0.505
Dred_2999
PFAM: S-layer domain protein domain protein; KEGG: mta:Moth_0189 hypothetical protein.
  
 
   0.463
Dred_3091
Ig family protein; PFAM: S-layer domain protein domain protein; Ig family protein; KEGG: mta:Moth_0243 hypothetical protein.
  
 
   0.438
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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