STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_2422PFAM: DNA polymerase, beta domain protein region; KEGG: gka:GK0965 hypothetical protein. (135 aa)    
Predicted Functional Partners:
Dred_2423
PFAM: protein of unknown function DUF86; KEGG: bcz:pE33L466_0270 hypothetical protein.
     0.994
Dred_2421
NADH:flavin oxidoreductase/NADH oxidase; Metal reductase able to reduce Fe(III)-chelates to Fe(II)- chelates, as well as soluble Cr(VI) and U(VI), using NADH as electron donor. Cannot use NADPH as an electron donor. Is unable to reduce riboflavin and FMN with NADH as electron donor. May have an in vivo role in metal reduction in D.reducens, which is an organism capable of reducing contaminant heavy metals and radionuclides.
       0.474
Dred_2533
KEGG: mta:Moth_1622 signal transduction histidine kinase regulating citrate/malate metabolism.
  
     0.433
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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