STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_2964TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: mta:Moth_2094 transcriptional regulator, BadM/Rrf2 family. (137 aa)    
Predicted Functional Partners:
iscS
Aminotransferase, class V; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.
  
  
 0.774
Dred_1001
PFAM: aminotransferase, class V; KEGG: dsy:DSY2426 hypothetical protein.
  
  
 0.774
Dred_2967
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SirA family protein; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: bfr:BF0575 pyridine nucleotide-disulphide oxidoreductase; Belongs to the sulfur carrier protein TusA family.
  
  
 0.726
Dred_0765
PFAM: nitrogen-fixing NifU domain protein; KEGG: chy:CHY_2198 putative FeS assembly protein.
  
  
 0.646
Dred_0653
PFAM: nitrogen-fixing NifU domain protein; KEGG: mtp:Mthe_0741 nitrogen-fixing NifU domain protein.
  
  
 0.612
Dred_2963
PFAM: AMP-dependent synthetase and ligase; KEGG: chy:CHY_1731 long-chain-fatty-acid--CoA ligase.
     
 0.531
Dred_2965
Pyruvate formate-lyase; KEGG: gsu:GSU2101 formate acetyltransferase; TIGRFAM: pyruvate formate-lyase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL.
       0.476
Dred_2966
TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Radical SAM domain protein; KEGG: gsu:GSU2102 pyruvate formate-lyase-activating enzyme, putative.
       0.476
Dred_2407
PFAM: flagellar motor switch protein FliG; KEGG: chy:CHY_0994 flagellar motor protein.
   
   0.439
Dred_0652
KEGG: ctc:CTC01156 carbon monoxide dehydrogenase beta subunit; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane.
     
 0.431
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.