Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Dred_3000TIGRFAM: capsular exopolysaccharide family; KEGG: gka:GK3326 capsular polysaccharide biosynthesis protein. (242 aa)    
Predicted Functional Partners:
Dred_3001
PFAM: lipopolysaccharide biosynthesis; KEGG: tte:TTE0733 capsular polysaccharide biosynthesis homolog YwqC.
 
 0.999
Dred_2997
PFAM: PHP C-terminal domain protein; KEGG: btl:BALH_4780 capsular polysaccharide biosynthesis protein.
  
 0.993
Dred_3137
PFAM: sugar transferase; KEGG: eca:ECA1420 undecaprenyl-phosphate galactosephosphotransferase.
 
  
 0.952
Dred_3047
PFAM: sugar transferase; KEGG: bca:BCE_5393 UDP-galactose phosphate transferase.
 
  
 0.951
Dred_1857
NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: chy:CHY_0732 Fe-hydrogenase, beta subunit.
  
 
 0.826
Dred_2999
PFAM: S-layer domain protein domain protein; KEGG: mta:Moth_0189 hypothetical protein.
  
    0.712
Dred_3041
PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: ste:STER_1057 polysaccharide transporter, PST family.
 
  
 0.680
Dred_3050
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: dsy:DSY3347 hypothetical protein.
 
  
 0.547
Dred_3002
TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: bca:BCE_5588 UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
     
 0.501
Dred_3112
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: mta:Moth_1399 cell envelope-related transcriptional attenuator.
  
  
 0.496
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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