STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_3012PFAM: HEPN domain protein; KEGG: dsy:DSY2699 hypothetical protein. (129 aa)    
Predicted Functional Partners:
Dred_3011
PFAM: DNA polymerase, beta domain protein region; KEGG: tte:TTE1957 predicted nucleotidyltransferase.
 
   0.982
Dred_0999
KEGG: sdn:Sden_1691 hypothetical protein.
  
     0.685
Dred_0986
KEGG: lma:LmjF34.0690 hypothetical protein, conserved.
  
     0.654
Dred_2345
SMART: Pyrrolo-quinoline quinone; KEGG: swo:Swol_1743 hypothetical protein.
  
     0.643
Dred_0852
KEGG: lma:LmjF34.0690 hypothetical protein, conserved.
  
     0.621
Dred_0998
TIGRFAM: YD repeat protein; PFAM: Salmonella virulence plasmid 65kDa B protein; YD repeat-containing protein; KEGG: reh:H16_B1352 insecticidal toxin complex protein.
  
     0.584
Dred_2344
PFAM: S-layer domain protein domain protein; KEGG: swo:Swol_1742 hypothetical protein.
  
     0.484
Dred_2358
PFAM: regulatory protein, LuxR; KEGG: aeh:Mlg_2151 two component transcriptional regulator, LuxR family.
  
     0.444
Dred_0499
PFAM: HEPN domain protein; KEGG: mta:Moth_1564 protein of unknown function DUF103.
  
     0.438
Dred_0937
PFAM: filamentation induced by cAMP protein Fic; KEGG: wol:WD1314 Fic family protein.
  
    0.402
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.