STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_3030KEGG: tde:TDE1825 hypothetical protein. (370 aa)    
Predicted Functional Partners:
Dred_0843
PFAM: TRAG family protein; KEGG: tte:TTE2042 ATPase involved in conjugal plasmid transfer.
   
 
 0.650
Dred_0976
PFAM: TRAG family protein; KEGG: mta:Moth_0365 TraG protein.
   
 
 0.650
Dred_3031
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: sha:SH0394 capsular polysaccharide synthesis enzyme CapG.
     
 0.629
Dred_3032
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility C-terminal domain; KEGG: bfr:BF1107 putative epimerase.
  
    0.617
Dred_3033
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; Polysaccharide biosynthesis C-terminal domain protein; KEGG: sha:SH0392 capsular polysaccharide synthesis enzyme CapE.
       0.610
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.