STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_3043KEGG: pin:Ping_1180 hypothetical protein. (349 aa)    
Predicted Functional Partners:
Dred_3044
PFAM: glycosyl transferase, family 2; KEGG: bcl:ABC3694 glycosyltransferase.
     
 0.777
Dred_1410
PFAM: glycosyl transferase, family 2; KEGG: dsy:DSY0591 hypothetical protein.
     
 0.610
Dred_3041
PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: ste:STER_1057 polysaccharide transporter, PST family.
  
  
 0.608
Dred_3045
Hypothetical protein.
       0.584
Dred_3042
KEGG: lbl:LBL_1222 hypothetical protein.
       0.561
Dred_2145
KEGG: ava:Ava_4779 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
  
 0.528
Dred_3137
PFAM: sugar transferase; KEGG: eca:ECA1420 undecaprenyl-phosphate galactosephosphotransferase.
     
 0.501
Dred_3142
PFAM: copper amine oxidase domain protein; KEGG: mta:Moth_2343 copper amine oxidase-like.
   
  
 0.449
Dred_3258
KEGG: wsu:WS0901 GGDEF family protein.
  
    0.414
Dred_3047
PFAM: sugar transferase; KEGG: bca:BCE_5393 UDP-galactose phosphate transferase.
     
 0.403
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.