STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_3052PFAM: polysaccharide deacetylase; KEGG: chy:CHY_0274 polysaccharide deacetylase family protein. (279 aa)    
Predicted Functional Partners:
Dred_1593
PFAM: glycosyl transferase, family 2; KEGG: pfl:PFL_0163 intercellular adhesion protein A.
 
  
 0.704
Dred_2202
PFAM: glycosyl transferase, group 1; KEGG: tte:TTE0949 predicted glycosyltransferase.
 
  
 0.694
Dred_3087
Hypothetical protein; KEGG: pen:PSEEN4078 glycosyl transferase MigA.
  
  
 0.583
Dred_1410
PFAM: glycosyl transferase, family 2; KEGG: dsy:DSY0591 hypothetical protein.
 
  
 0.547
Dred_3053
Protein of unknown function UPF0052 and CofD; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
  
    0.500
Dred_3054
Uncharacterized P-loop ATPase protein UPF0042; Displays ATPase and GTPase activities.
       0.476
Dred_1388
PFAM: glycosyl transferase, family 2; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: tte:TTE0501 glycosyltransferase involved in cell wall biogenesis.
 
  
 0.422
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
Server load: medium (60%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.