STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_3086Diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: tte:TTE2335 diguanylate cyclase/phosphodiesterase domain 1 (GGDEF). (593 aa)    
Predicted Functional Partners:
Dred_0836
PFAM: EAL domain protein; KEGG: tcx:Tcr_1820 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains).
 
 0.959
Dred_2145
KEGG: ava:Ava_4779 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
 
 0.912
Dred_3089
KEGG: gme:Gmet_0849 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: GAF domain protein; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region.
 
 0.888
leuS
TIGRFAM: leucyl-tRNA synthetase; KEGG: chy:CHY_0393 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
   0.844
Dred_0009
PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: swo:Swol_2407 HD domain protein.
 
 0.843
Dred_3258
KEGG: wsu:WS0901 GGDEF family protein.
  
 
 0.838
Dred_0799
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ccr:CC2462 stalked-cell differentiation controlling protein.
 
  
 0.827
Dred_3087
Hypothetical protein; KEGG: pen:PSEEN4078 glycosyl transferase MigA.
  
  
 0.825
Dred_3090
Putative Chase2 sensor protein; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; KEGG: swo:Swol_0343 transmembrane sensor domain-like protein.
 
  
 0.821
Dred_0780
Diguanylate cyclase with PAS/PAC sensor; KEGG: dsy:DSY3403 HD-GYP domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; metal-dependent phosphohydrolase, HD sub domain; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; metal-dependent phosphohydrolase, HD region.
 
0.805
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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