STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_3142PFAM: copper amine oxidase domain protein; KEGG: mta:Moth_2343 copper amine oxidase-like. (746 aa)    
Predicted Functional Partners:
Dred_3141
Hypothetical protein; KEGG: mta:Moth_2342 outer membrane protein-like.
 
   
 0.910
Dred_2680
PFAM: S-layer domain protein domain protein; KEGG: mta:Moth_1459 Ig-like, group 2.
 
  
 0.764
Dred_2746
PFAM: copper amine oxidase domain protein; KEGG: sth:STH2256 hypothetical protein.
  
     0.763
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
   
    0.751
Dred_2998
PFAM: S-layer domain protein domain protein; Cna B domain protein; KEGG: mta:Moth_0188 hypothetical protein.
 
  
 0.750
Dred_2917
PFAM: S-layer domain protein domain protein; KEGG: sth:STH3168 S-layer associated protein, putataive.
 
     0.735
Dred_3138
O-antigen polymerase; PFAM: TPR repeat-containing protein; O-antigen polymerase; SMART: Tetratricopeptide domain protein; KEGG: chy:CHY_0219 putative O-antigen polymerase.
 
     0.734
Dred_2738
PFAM: S-layer domain protein domain protein; KEGG: tte:TTE0116 S-layer homology domain.
 
     0.727
Dred_2478
PFAM: S-layer domain protein domain protein; KEGG: swo:Swol_2183 hypothetical protein.
  
    0.720
Dred_3091
Ig family protein; PFAM: S-layer domain protein domain protein; Ig family protein; KEGG: mta:Moth_0243 hypothetical protein.
 
  
 0.720
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.