Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Dred_3192PFAM: aminotransferase, class I and II; KEGG: chy:CHY_0115 putative aspartate aminotransferase. (399 aa)    
Predicted Functional Partners:
Dred_3193
PFAM: regulatory protein, AsnC/Lrp family; KEGG: mta:Moth_1189 transcriptional regulator, AsnC family.
 
  
 0.962
Dred_2805
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: bha:BH1728 glutamate synthase (large subunit).
  
  
 0.628
Dred_1150
PFAM: Prephenate dehydrogenase; KEGG: mta:Moth_1333 prephenate dehydrogenase.
  
 
 0.560
Dred_0014
TIGRFAM: D-3-phosphoglycerate dehydrogenase; PFAM: amino acid-binding ACT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: chy:CHY_2698 D-3-phosphoglycerate dehydrogenase.
 
 
 0.462
Dred_0783
PFAM: prephenate dehydratase; Chorismate mutase; KEGG: det:DET0461 chorismate mutase / prephenate dehydratase.
 
  
 0.433
Dred_3194
PFAM: Propeptide, PepSY amd peptidase M4; KEGG: tte:TTE2550 putative spore germination protein.
       0.404
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.