STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_3200PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: chy:CHY_2405 ferredoxin. (62 aa)    
Predicted Functional Partners:
Dred_3199
PFAM: Nitrate reductase, gamma subunit; KEGG: dsy:DSY4518 hypothetical protein.
 
   
 0.807
Dred_2929
PFAM: HEAT domain containing protein; KEGG: sfu:Sfum_3216 hypothetical protein.
 
     0.752
Dred_3186
KEGG: chy:CHY_2409 dissimilatory sulfite reductase subunit B; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region.
 
  
 0.742
Dred_3187
KEGG: chy:CHY_2410 dissimilatory sulfite reductase alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region.
 
  
 0.721
Dred_3198
PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: chy:CHY_2403 putative reductase, iron-sulfur cluster-binding subunit.
 
     0.706
Dred_0637
TIGRFAM: adenylylsulfate reductase, alpha subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: sfu:Sfum_1048 adenylylsulfate reductase, alpha subunit.
 
 
 0.664
Dred_0424
PFAM: protein of unknown function DUF81; KEGG: dvl:Dvul_2200 protein of unknown function DUF81.
  
   
 0.617
Dred_3197
PFAM: DsrC family protein; KEGG: mta:Moth_1632 DsrC-like protein.
 
   
 0.579
Dred_1654
NAD(P)-dependent iron-only hydrogenase catalytic subunit; TIGRFAM: hydrogenases, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; iron hydrogenase, small subunit; hydrogenase large subunit domain protein; KEGG: tte:TTE0894 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G).
     
 0.578
Dred_1446
PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: dsy:DSY0306 hypothetical protein.
  
     0.516
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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