STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Dred_3203PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:bll3318 ABC transporter ATP-binding protein. (275 aa)    
Predicted Functional Partners:
Dred_3205
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bce:BC0425 hydroxymethylpyrimidine transport system permease protein.
 
 0.983
Dred_3204
PFAM: Prokaryotic membrane lipoprotein lipid attachment site; KEGG: bca:BCE_0492 ABC transporter, substrate-binding protein, putative.
 
 
 0.968
Dred_1575
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY2483 hypothetical protein.
 
 0.947
Dred_0438
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_B2358 ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit.
 
 0.936
Dred_2780
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY1526 hypothetical protein.
 
 0.931
Dred_1834
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tte:TTE0641 ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, permease components.
 
 0.927
Dred_3206
PFAM: protein of unknown function DUF77; KEGG: bca:BCE_0490 hypothetical protein.
 
    0.861
Dred_1573
SMART: extracellular solute-binding protein, family 3; KEGG: dsy:DSY2481 hypothetical protein.
 
 
 0.847
Dred_3202
TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase, catalytic region; KEGG: btk:BT9727_3600 thiamine pyrophosphokinase.
 
     0.833
Dred_2782
PFAM: NLPA lipoprotein; KEGG: dsy:DSY1527 hypothetical protein.
 
 
 0.713
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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