Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Dred_3208PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: btl:BALH_2502 glycine betaine/L-proline ABC transporter, permease. (278 aa)    
Predicted Functional Partners:
Dred_0473
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: bce:BC2792 glycine betaine-binding protein.
 
 0.999
Dred_3207
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: bld:BLi02626 glycine betaine ABC transporter (glycine betaine-binding protein); RBL01841.
 
 0.999
Dred_3209
KEGG: bsu:BG11370 glycine betaine transport system ATP-binding protein; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase.
 0.999
purN
Formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
   
  
 0.628
Dred_3210
KEGG: bcl:ABC1070 transcriptional regulator; Belongs to the GbsR family.
 
     0.593
Dred_0246
ABC transporter related protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
   
  0.541
ecfA
ABC transporter related protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
     
  0.540
Dred_2564
Cobalt ABC transporter, ATPase subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.
     
  0.540
Dred_2676
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mta:Moth_1456 ABC transporter related.
     
  0.540
Dred_2733
TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: cno:NT01CX_1331 cobalt transport protein.
     
  0.540
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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