STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_3243PFAM: regulatory protein GntR, HTH; KEGG: gka:GK1620 transcriptional regulator (GntR family). (126 aa)    
Predicted Functional Partners:
Dred_3241
KEGG: gka:GK1622 hypothetical protein.
 
  
 0.961
Dred_3242
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gka:GK1621 ABC transporter (ATP-binding protein).
 
  
 0.958
Dred_1514
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH0382 ABC transporter (ATP-binding protein).
 
  
 0.589
Dred_3240
KEGG: chy:CHY_2517 hypothetical protein.
       0.510
Dred_1506
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bsu:BG13508 similar to transcriptional regulator (AraC/XylS family).
  
  
 0.483
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.