STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_3283KEGG: dsy:DSY5009 hypothetical protein. (40 aa)    
Predicted Functional Partners:
Dred_3282
KEGG: dsy:DSY5009 hypothetical protein.
       0.718
Dred_3271
PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: dsy:DSY4998 hypothetical protein.
   
 
 0.665
Dred_3281
PFAM: microcompartments protein; KEGG: dsy:DSY5008 hypothetical protein.
       0.646
Dred_1301
PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: dsy:DSY0412 hypothetical protein.
   
 
 0.590
Dred_3280
TIGRFAM: acetaldehyde dehydrogenase (acetylating); KEGG: dsy:DSY5007 hypothetical protein.
  
  
 0.548
Dred_3284
KEGG: dde:Dde_3289 hypothetical protein.
       0.535
Dred_3285
KEGG: dde:Dde_3288 hypothetical protein.
       0.520
Dred_3279
PFAM: iron-containing alcohol dehydrogenase; KEGG: cno:NT01CX_0486 alcetaldehyde dehydrogenase or NADPH-dependent butanol dehydrogenase.
       0.495
cutC
Formate C-acetyltransferase; Glycine radical enzyme that catalyzes the cleavage of a C-N bond in choline, producing trimethylamine (TMA) and acetaldehyde. Belongs to the glycyl radical enzyme (GRE) family. CutC subfamily.
       0.400
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.