STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_3285KEGG: dde:Dde_3288 hypothetical protein. (362 aa)    
Predicted Functional Partners:
Dred_3282
KEGG: dsy:DSY5009 hypothetical protein.
 
     0.878
Dred_3284
KEGG: dde:Dde_3289 hypothetical protein.
       0.838
Dred_3272
PFAM: microcompartments protein; KEGG: dsy:DSY4999 hypothetical protein.
 
     0.836
cutC
Formate C-acetyltransferase; Glycine radical enzyme that catalyzes the cleavage of a C-N bond in choline, producing trimethylamine (TMA) and acetaldehyde. Belongs to the glycyl radical enzyme (GRE) family. CutC subfamily.
 
     0.823
Dred_3273
TIGRFAM: ethanolamine utilization protein EutJ family protein; KEGG: dsy:DSY5000 hypothetical protein.
 
     0.805
Dred_3274
KEGG: dsy:DSY5001 hypothetical protein.
 
     0.718
Dred_3288
PFAM: Choline/ethanolamine kinase; KEGG: fnu:FN1237 choline kinase.
 
  
 0.689
Dred_3275
KEGG: dsy:DSY5002 hypothetical protein; Belongs to the EutP/PduV family.
 
     0.668
Dred_3268
Transcriptional regulator; PFAM: protein of unknown function DUF861, cupin_3; Ethanolamine utilisation EutQ family protein; KEGG: dsy:DSY4995 hypothetical protein.
 
     0.656
cutD
Glycyl-radical enzyme activating protein family; Catalyzes activation of the choline trimethylamine-lyase CutC under anaerobic conditions by generation of an organic free radical on a glycine residue, via an homolytic cleavage of S-adenosyl-L-methionine (SAM).
 
     0.608
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.