STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acry_0120PFAM: glycosyl transferase, family 2. (375 aa)    
Predicted Functional Partners:
Acry_0118
PFAM: Squalene/phytoene synthase.
  
 0.984
Acry_0121
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain.
 
   0.951
Acry_0119
PFAM: Squalene/phytoene synthase.
  
 0.931
Acry_0117
PFAM: amine oxidase.
 
   
 0.920
Acry_0122
Hypothetical protein.
 
  
 0.855
Acry_1831
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
 
     0.770
Acry_1685
TIGRFAM: squalene/oxidosqualene cyclase; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase.
  
     0.765
Acry_0413
Hypothetical protein.
  
    0.738
Acry_1044
Exporter of the RND superfamily-like protein.
  
     0.736
Acry_1836
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
 
     0.706
Your Current Organism:
Acidiphilium cryptum
NCBI taxonomy Id: 349163
Other names: A. cryptum JF-5, Acidiphilium cryptum JF-5, Acidiphilium cryptum str. JF-5, Acidiphilium cryptum strain JF-5, Acidiphilum cryptum JF-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.