Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acry_0201Hypothetical protein. (429 aa)    
Predicted Functional Partners:
Acry_0202
Hypothetical protein.
 
     0.955
Acry_0203
Hypothetical protein.
 
     0.892
Acry_0663
Hypothetical protein.
 
   
 0.779
Acry_2346
Hypothetical protein.
  
     0.769
Acry_1520
PFAM: acyltransferase 3.
  
     0.760
Acry_1350
Methyltransferase type 12; PFAM: Tetratricopeptide TPR_4; Methyltransferase type 11; Methyltransferase type 12.
  
     0.755
Acry_1205
Capsular polysaccharide biosynthesis protein-like protein.
  
     0.748
Acry_0943
Hypothetical protein.
  
     0.745
Acry_0295
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
  
     0.736
Acry_2096
TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein.
 
   
 0.728
Your Current Organism:
Acidiphilium cryptum
NCBI taxonomy Id: 349163
Other names: A. cryptum JF-5, Acidiphilium cryptum JF-5, Acidiphilium cryptum str. JF-5, Acidiphilium cryptum strain JF-5, Acidiphilum cryptum JF-5
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