Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Acry_0722PFAM: major facilitator superfamily MFS_1. (391 aa)    
Predicted Functional Partners:
uppP
Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
 
     0.824
Acry_0721
Hypothetical protein.
       0.779
Acry_0295
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
  
   
 0.745
Acry_0010
ABC-type molybdate transport system periplasmic component-like protein.
  
     0.735
Acry_0881
PFAM: phosphoesterase.
  
     0.701
Acry_0256
ABC-type Fe3+ transport system periplasmic component-like protein.
 
     0.697
Acry_3054
PFAM: phosphoesterase.
  
     0.679
Acry_0203
Hypothetical protein.
  
     0.677
Acry_1149
PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; Belongs to the purine-cytosine permease (2.A.39) family.
  
     0.672
Acry_3034
PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; Belongs to the purine-cytosine permease (2.A.39) family.
  
     0.671
Your Current Organism:
Acidiphilium cryptum
NCBI taxonomy Id: 349163
Other names: A. cryptum JF-5, Acidiphilium cryptum JF-5, Acidiphilium cryptum str. JF-5, Acidiphilium cryptum strain JF-5, Acidiphilum cryptum JF-5
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