Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acry_0727Hypothetical protein. (439 aa)    
Predicted Functional Partners:
Acry_1350
Methyltransferase type 12; PFAM: Tetratricopeptide TPR_4; Methyltransferase type 11; Methyltransferase type 12.
 
     0.697
Acry_2346
Hypothetical protein.
 
     0.666
tyrS
tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.
       0.643
Acry_0725
PFAM: Fe-S metabolism associated SufE.
       0.641
Acry_0663
Hypothetical protein.
  
     0.631
Acry_1205
Capsular polysaccharide biosynthesis protein-like protein.
  
     0.608
Acry_1250
Conserved hypothetical protein; Belongs to the UPF0312 family.
  
     0.605
Acry_1197
Hypothetical protein.
  
    0.604
Acry_0382
Capsular polysaccharide biosynthesis protein-like protein.
  
     0.602
Acry_1023
PFAM: MaoC domain protein dehydratase.
  
     0.595
Your Current Organism:
Acidiphilium cryptum
NCBI taxonomy Id: 349163
Other names: A. cryptum JF-5, Acidiphilium cryptum JF-5, Acidiphilium cryptum str. JF-5, Acidiphilium cryptum strain JF-5, Acidiphilum cryptum JF-5
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