Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Acry_0741PFAM: ABC-2 type transporter. (293 aa)    
Predicted Functional Partners:
Acry_0742
PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.999
Acry_2668
Hypothetical protein.
  
  
 0.717
Acry_1524
PFAM: polysaccharide export protein.
  
  
 0.687
Acry_2963
PFAM: polysaccharide export protein.
  
  
 0.687
Acry_0615
PFAM: glycosyl transferase, family 2; glycosyl transferase, group 1.
 
  
 0.686
Acry_2183
PFAM: glycosyl transferase, family 2.
 
  
 0.668
Acry_1895
PFAM: glycosyl transferase, family 2; Tetratricopeptide TPR_2 repeat protein.
 
  
 0.643
Acry_0548
Mannose-6-phosphate isomerase, type 2; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein.
  
  
 0.529
Acry_0738
Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.
 
    0.525
Acry_2908
PFAM: glycosyl transferase, group 1.
 
  
 0.455
Your Current Organism:
Acidiphilium cryptum
NCBI taxonomy Id: 349163
Other names: A. cryptum JF-5, Acidiphilium cryptum JF-5, Acidiphilium cryptum str. JF-5, Acidiphilium cryptum strain JF-5, Acidiphilum cryptum JF-5
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