Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acry_0835PFAM: protein of unknown function DUF1491. (111 aa)    
Predicted Functional Partners:
Acry_1314
PFAM: UspA domain protein.
  
     0.695
Acry_1671
PFAM: protein of unknown function DUF1239.
  
     0.688
Acry_0657
Hypothetical protein.
  
     0.669
Acry_1672
PFAM: OstA family protein.
  
     0.653
Acry_0631
Hypothetical protein.
  
     0.651
Acry_0831
Hypothetical protein.
       0.583
Acry_1505
Hypothetical protein.
  
     0.575
Acry_0352
Hypothetical protein.
  
     0.571
Acry_0155
TIGRFAM: phasin family protein.
  
     0.563
Acry_0832
PFAM: binding-protein-dependent transport systems inner membrane component.
       0.557
Your Current Organism:
Acidiphilium cryptum
NCBI taxonomy Id: 349163
Other names: A. cryptum JF-5, Acidiphilium cryptum JF-5, Acidiphilium cryptum str. JF-5, Acidiphilium cryptum strain JF-5, Acidiphilum cryptum JF-5
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