Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acry_0855PFAM: protein of unknown function DUF541. (235 aa)    
Predicted Functional Partners:
Acry_0013
Hypothetical protein.
  
     0.625
Acry_0422
Hypothetical protein.
  
     0.571
Acry_0244
Hypothetical protein.
  
     0.564
Acry_0385
Hypothetical protein.
  
     0.564
Acry_0765
Hypothetical protein.
  
     0.562
Acry_1651
Hypothetical protein.
  
     0.521
Acry_2445
PFAM: outer membrane chaperone Skp (OmpH).
  
     0.521
Acry_0176
Hypothetical protein.
  
     0.518
Acry_1776
Hypothetical protein.
  
     0.516
Acry_3080
Uncharacterized membrane-associated protein-like protein.
 
     0.500
Your Current Organism:
Acidiphilium cryptum
NCBI taxonomy Id: 349163
Other names: A. cryptum JF-5, Acidiphilium cryptum JF-5, Acidiphilium cryptum str. JF-5, Acidiphilium cryptum strain JF-5, Acidiphilum cryptum JF-5
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