Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acry_0891Hypothetical protein. (155 aa)    
Predicted Functional Partners:
Acry_0888
PFAM: Fimbrial assembly family protein.
 
  
 0.929
Acry_0892
PFAM: type II secretion system protein.
 
  
 0.883
Acry_0893
PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase.
 
   
 0.864
Acry_0884
Hypothetical protein.
 
     0.861
Acry_0885
TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein.
 
   
 0.842
Acry_0890
Hypothetical protein.
  
  
 0.816
Acry_0889
Hypothetical protein.
  
  
 0.811
Acry_0887
Hypothetical protein.
 
     0.784
Acry_0894
Peptidase A24A domain protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.695
Acry_0883
TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G.
 
  
 0.552
Your Current Organism:
Acidiphilium cryptum
NCBI taxonomy Id: 349163
Other names: A. cryptum JF-5, Acidiphilium cryptum JF-5, Acidiphilium cryptum str. JF-5, Acidiphilium cryptum strain JF-5, Acidiphilum cryptum JF-5
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