Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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[Homology]
Score
Acry_0893PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase. (557 aa)    
Predicted Functional Partners:
Acry_0892
PFAM: type II secretion system protein.
 
 
 0.998
Acry_0883
TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G.
 
 
 0.963
Acry_0890
Hypothetical protein.
  
 
 0.956
Acry_0894
Peptidase A24A domain protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.956
Acry_0889
Hypothetical protein.
  
 
 0.951
Acry_0888
PFAM: Fimbrial assembly family protein.
 
 
 0.944
Acry_0885
TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein.
 
  
 0.903
Acry_0891
Hypothetical protein.
 
   
 0.864
Acry_0887
Hypothetical protein.
 
   
 0.751
Acry_2038
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
  
 0.737
Your Current Organism:
Acidiphilium cryptum
NCBI taxonomy Id: 349163
Other names: A. cryptum JF-5, Acidiphilium cryptum JF-5, Acidiphilium cryptum str. JF-5, Acidiphilium cryptum strain JF-5, Acidiphilum cryptum JF-5
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