Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acry_0938PFAM: acyltransferase 3. (364 aa)    
Predicted Functional Partners:
Acry_0943
Hypothetical protein.
 
     0.726
proS
prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro); Belongs to the class-II aminoacyl-tRNA synthetase family. ProS type 2 subfamily.
       0.677
Acry_0940
TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214.
       0.677
Acry_0941
PFAM: ABC transporter related; SMART: AAA ATPase.
       0.677
Acry_0084
Hypothetical protein.
  
     0.647
Acry_0124
PFAM: acyltransferase 3.
  
     0.635
Acry_1350
Methyltransferase type 12; PFAM: Tetratricopeptide TPR_4; Methyltransferase type 11; Methyltransferase type 12.
 
   
 0.618
Acry_0942
PFAM: Alpha/beta hydrolase fold-3 domain protein.
       0.604
Acry_1520
PFAM: acyltransferase 3.
 
   
 0.590
Acry_0974
Hypothetical protein.
 
   
 0.566
Your Current Organism:
Acidiphilium cryptum
NCBI taxonomy Id: 349163
Other names: A. cryptum JF-5, Acidiphilium cryptum JF-5, Acidiphilium cryptum str. JF-5, Acidiphilium cryptum strain JF-5, Acidiphilum cryptum JF-5
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