Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acry_0989TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase. (417 aa)    
Predicted Functional Partners:
Acry_0988
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 0.999
Acry_0987
PFAM: Substrate-binding region of ABC-type glycine betaine transport system.
 
 0.996
Acry_0690
PFAM: Substrate-binding region of ABC-type glycine betaine transport system.
 
 0.992
Acry_0991
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
 
   
 0.800
Acry_0990
PFAM: aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
   
 0.783
Acry_0995
PFAM: Sarcosine oxidase, gamma subunit.
  
  
 0.595
Acry_0993
PFAM: Sarcosine oxidase, delta subunit, heterotetrameric.
  
    0.594
Acry_0994
TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glucose-inhibited division protein A; glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; Belongs to the GcvT family.
  
  
 0.581
Acry_0435
PFAM: ABC transporter related; SMART: AAA ATPase.
 
     
0.537
Acry_0992
TIGRFAM: sarcosine oxidase, beta subunit family; PFAM: FAD dependent oxidoreductase.
  
    0.468
Your Current Organism:
Acidiphilium cryptum
NCBI taxonomy Id: 349163
Other names: A. cryptum JF-5, Acidiphilium cryptum JF-5, Acidiphilium cryptum str. JF-5, Acidiphilium cryptum strain JF-5, Acidiphilum cryptum JF-5
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