Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Acry_1073PFAM: NADPH-dependent FMN reductase. (248 aa)    
Predicted Functional Partners:
Acry_1074
PFAM: phosphate transporter.
     
 0.769
Acry_2812
TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related.
 
  
 0.601
Acry_1071
Ribose transport system ATP-binding protein; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; 3.A.1.2.-; 3.A.1.2.-; Belongs to the binding-protein-dependent transport system permease family.
       0.574
Acry_1072
Monosaccharide ABC transporter membrane protein, CUT2 family; PFAM: inner-membrane translocator; 3.A.1.2.-; Belongs to the binding-protein-dependent transport system permease family.
       0.574
Acry_1070
Monosaccharide ABC transporter substrate-binding protein, CUT2 family; 3.A.1.2.-.
       0.545
Acry_2811
Transcriptional regulator, ArsR family; SMART: regulatory protein, ArsR.
 
   
 0.511
Acry_2813
Arsenite efflux membrane protein ArsB (TC 3.A.4.1.1; TIGRFAM: arsenical pump membrane protein; PFAM: Arsenical pump membrane protein; Citrate transporter; 3.A.4.1.1; 2.A.45.1.1.
  
  
 0.462
Acry_1067
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; PFAM: ribulose bisphosphate carboxylase, large chain; Belongs to the RuBisCO large chain family.
       0.430
Acry_1068
PFAM: type III effector Hrp-dependent outers.
       0.430
Acry_1069
Hypothetical protein.
       0.430
Your Current Organism:
Acidiphilium cryptum
NCBI taxonomy Id: 349163
Other names: A. cryptum JF-5, Acidiphilium cryptum JF-5, Acidiphilium cryptum str. JF-5, Acidiphilium cryptum strain JF-5, Acidiphilum cryptum JF-5
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