Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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Databases
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[Homology]
Score
recODNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (251 aa)    
Predicted Functional Partners:
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
   
 
 0.891
parC
DNA topoisomerase IV subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.
 
  
 0.871
Acry_1354
PFAM: PhoH family protein; KH, type 1, domain protein.
  
  
 0.824
Acry_1455
TIGRFAM: UvrD-like DNA helicase, C terminal; PFAM: UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
 
   
 0.820
Acry_1206
PFAM: Uncharacterized protein UPF0114.
       0.779
Acry_1207
PFAM: protein of unknown function DUF893, YccS/YhfK.
       0.779
Acry_1211
TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein.
       0.763
Acry_1210
Hypothetical protein.
     
 0.758
Acry_1336
PFAM: protein of unknown function DUF1321.
  
     0.752
Acry_1606
PFAM: protein of unknown function DUF1013.
  
     0.749
Your Current Organism:
Acidiphilium cryptum
NCBI taxonomy Id: 349163
Other names: A. cryptum JF-5, Acidiphilium cryptum JF-5, Acidiphilium cryptum str. JF-5, Acidiphilium cryptum strain JF-5, Acidiphilum cryptum JF-5
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