Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acry_1285PFAM: transposase IS3/IS911 family protein. (125 aa)    
Predicted Functional Partners:
Acry_1286
Hypothetical protein.
 
  
 0.953
Acry_1287
Hypothetical protein.
 
  
 0.883
Acry_1815
Hypothetical protein.
 
  
 0.803
Acry_1284
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; helix-turn-helix, Fis-type; LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
       0.450
Your Current Organism:
Acidiphilium cryptum
NCBI taxonomy Id: 349163
Other names: A. cryptum JF-5, Acidiphilium cryptum JF-5, Acidiphilium cryptum str. JF-5, Acidiphilium cryptum strain JF-5, Acidiphilum cryptum JF-5
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