Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Acry_1797PFAM: ABC-2 type transporter. (368 aa)    
Predicted Functional Partners:
Acry_1795
PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.996
Acry_1794
PFAM: secretion protein HlyD family protein.
 
  
 0.957
Acry_0435
PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.947
Acry_1796
PFAM: ABC-2 type transporter.
 
    
0.825
Acry_3016
PFAM: ABC transporter related; SMART: AAA ATPase.
      0.802
Acry_1673
PFAM: ABC transporter related; SMART: AAA ATPase.
      0.771
Acry_1774
PFAM: nitroreductase.
  
  
 0.763
Acry_0357
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; 3.A.1.4.-.
 
      0.681
Acry_1793
Hypothetical protein.
       0.567
potA
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
      0.536
Your Current Organism:
Acidiphilium cryptum
NCBI taxonomy Id: 349163
Other names: A. cryptum JF-5, Acidiphilium cryptum JF-5, Acidiphilium cryptum str. JF-5, Acidiphilium cryptum strain JF-5, Acidiphilum cryptum JF-5
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