Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acry_1920TIGRFAM: oligoendopeptidase, M3 family; PFAM: peptidase M3A and M3B, thimet/oligopeptidase F. (554 aa)    
Predicted Functional Partners:
Acry_1918
PFAM: YbaK/prolyl-tRNA synthetase associated region.
       0.572
Acry_1919
Uncharacterized relative of glutathione S-transferase MAPEG superfamily-like protein.
       0.572
Acry_0908
Aminopeptidase T, Metallo peptidase, MEROPS family M29; PFAM: peptidase M29, aminopeptidase II.
 
   
 0.547
rplQ
PFAM: ribosomal protein L17.
       0.527
Acry_2286
Pyroglutamyl-peptidase I, Cysteine peptidase, MEROPS family C15; Removes 5-oxoproline from various penultimate amino acid residues except L-proline.
  
   
 0.514
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
  
 0.496
Your Current Organism:
Acidiphilium cryptum
NCBI taxonomy Id: 349163
Other names: A. cryptum JF-5, Acidiphilium cryptum JF-5, Acidiphilium cryptum str. JF-5, Acidiphilium cryptum strain JF-5, Acidiphilum cryptum JF-5
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